Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| inner membrane abc transporter permease protein ycjo | SHM7688_01542 | O58759 | Negative | 1589605 - 1590633 | 37742.6 |
| putative abc transporter-binding protein precursor | SHM7688_01543 | Not Available | Negative | 1590712 - 1591947 | 42395.9 |
| sn-glycerol-3-phosphate import atp-binding protein ugpc | SHM7688_01544 | A0K3S5 | Negative | 1592032 - 1593081 | 38155.0 |
| putative ester cyclase | SHM7688_01545 | Not Available | Positive | 1593265 - 1594272 | 37663.1 |
| 5-deoxy-glucuronate isomerase | SHM7688_01546 | A4IPB4 | Negative | 1594358 - 1595164 | 29922.1 |
| inosose dehydratase | SHM7688_01547 | P49304 | Negative | 1595161 - 1596060 | 32389.3 |
| 3d-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase | SHM7688_01548 | Q5KYR0 | Negative | 1596070 - 1597911 | 65768.0 |
| 5-dehydro-2-deoxygluconokinase | SHM7688_01549 | Q65D02 | Negative | 1597908 - 1599833 | 69620.4 |
| ribose import atp-binding protein rbsa | SHM7688_01550 | P0DTT6 | Negative | 1599844 - 1600662 | 29173.2 |
| xylose transport system permease protein xylh | SHM7688_01551 | P0AGI6 | Negative | 1600675 - 1601796 | 39975.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
