Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional hexulose-6-phosphate synthase/ribonuclease regulator | SHM7688_01532 | Not Available | Negative | 1579993 - 1580688 | 24900.8 |
| ab hydrolase superfamily protein ydjp | SHM7688_01533 | Not Available | Negative | 1580685 - 1581380 | 25109.7 |
| cupin domain protein | SHM7688_01534 | Not Available | Negative | 1581565 - 1582524 | 34471.8 |
| putative ester cyclase | SHM7688_01535 | Not Available | Negative | 1582741 - 1583730 | 36467.1 |
| cryptic asc operon repressor | SHM7688_01536 | A7N1L2 | Negative | 1583735 - 1584772 | 37340.4 |
| 2-dehydro-3-deoxy-d-gluconate 5-dehydrogenase | SHM7688_01537 | Q8JIS3 | Negative | 1584772 - 1585536 | 26258.5 |
| putative ester cyclase | SHM7688_01538 | Not Available | Negative | 1585541 - 1586587 | 39183.6 |
| sulfopropanediol 3-dehydrogenase | SHM7688_01539 | Q988P7 | Negative | 1586651 - 1587982 | 48063.2 |
| putative ester cyclase | SHM7688_01540 | Not Available | Negative | 1588061 - 1588594 | 20163.5 |
| trehalose transport system permease protein sugb | SHM7688_01541 | Q7LYX6 | Negative | 1588721 - 1589605 | 32700.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
