Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cys regulon transcriptional activator | SHM7688_01522 | Q04778 | Positive | 1569203 - 1570147 | 35095.3 |
| acetylornithine deacetylase | SHM7688_01523 | C5BC62 | Positive | 1570264 - 1571412 | 41464.3 |
| acetylpolyamine aminohydrolase | SHM7688_01524 | Q48935 | Negative | 1571402 - 1572436 | 37510.3 |
| spermidine/putrescine-binding periplasmic protein precursor | SHM7688_01525 | P44731 | Negative | 1572509 - 1573546 | 37566.2 |
| inner membrane abc transporter permease protein ydcv | SHM7688_01526 | P0AFL2 | Negative | 1573566 - 1574375 | 29268.5 |
| spermidine/putrescine transport system permease protein potb | SHM7688_01527 | P0AFK4 | Negative | 1574379 - 1575308 | 34324.3 |
| spermidine/putrescine import atp-binding protein pota | SHM7688_01528 | Q160M2 | Negative | 1575308 - 1576423 | 40926.4 |
| putative siderophore transport system atp-binding protein yusv | SHM7688_01529 | P15031 | Negative | 1576817 - 1577590 | 27710.9 |
| hemin transport system permease protein hmuu | SHM7688_01530 | Not Available | Negative | 1577587 - 1578648 | 37579.4 |
| ferrichrome/ferrioxamine b periplasmic transporter | SHM7688_01531 | Not Available | Negative | 1578706 - 1579860 | 42407.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
