Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutathione s-transferase gst-4.5 | SHM7688_01512 | Not Available | Positive | 1560359 - 1560973 | 22791.2 |
| hypothetical protein | SHM7688_01513 | Not Available | Positive | 1560976 - 1561551 | 21153.9 |
| snoal-like domain protein | SHM7688_01514 | Not Available | Positive | 1561544 - 1561990 | 16788.8 |
| hypothetical protein | SHM7688_01515 | Not Available | Negative | 1562122 - 1562400 | 10497.6 |
| adenosylmethionine-8-amino-7-oxononanoate aminotransferase | SHM7688_01516 | Q9I6J2 | Negative | 1562571 - 1563923 | 48666.1 |
| response regulator fixj | SHM7688_01517 | Not Available | Positive | 1564076 - 1564870 | 29213.8 |
| putative oxidoreductase czco | SHM7688_01518 | Not Available | Positive | 1565192 - 1566469 | 46420.5 |
| enamine/imine deaminase | SHM7688_01519 | Not Available | Positive | 1566485 - 1566901 | 15541.5 |
| hypothetical protein | SHM7688_01520 | Not Available | Positive | 1566991 - 1567665 | 23237.4 |
| aldehyde dehydrogenase puuc | SHM7688_01521 | P23883 | Positive | 1567681 - 1569177 | 53075.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
