Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent zinc metalloprotease ftsh | SHM7688_01502 | A1URA3 | Positive | 1549973 - 1551892 | 69223.5 |
| putative metal-sulfur cluster biosynthesis proteins yuad | SHM7688_01503 | Not Available | Positive | 1552051 - 1552650 | 21757.1 |
| formate--tetrahydrofolate ligase | SHM7688_01504 | Q1GE26 | Positive | 1552825 - 1554501 | 59819.9 |
| salicylate biosynthesis protein pchb | SHM7688_01505 | Not Available | Positive | 1554561 - 1554857 | 11246.5 |
| bifunctional protein fold protein | SHM7688_01506 | Q987T6 | Positive | 1554874 - 1555767 | 31496.4 |
| autoinducer 2 sensor kinase/phosphatase luxq | SHM7688_01507 | P48027 | Positive | 1556486 - 1558051 | 56758.4 |
| sensory/regulatory protein rpfc | SHM7688_01508 | Q9F8D7 | Positive | 1558051 - 1558482 | 15569.8 |
| hypothetical protein | SHM7688_01509 | Not Available | Positive | 1558671 - 1558844 | 6033.59 |
| hypothetical protein | SHM7688_01510 | Not Available | Positive | 1559118 - 1559573 | 17201.0 |
| hypothetical protein | SHM7688_01511 | Not Available | Positive | 1559599 - 1560333 | 26939.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
