Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-dehydro-3-deoxygluconokinase | SHM7688_01492 | P42720 | Positive | 1541221 - 1542150 | 32653.0 |
| hypothetical protein | SHM7688_01493 | Not Available | Positive | 1542276 - 1542989 | 25910.5 |
| acyl-coa thioester hydrolase ybgc | SHM7688_01494 | Not Available | Positive | 1543070 - 1543456 | 14675.9 |
| biopolymer transport protein exbb | SHM7688_01495 | P50598 | Positive | 1543568 - 1544245 | 24554.6 |
| biopolymer transport protein exbd | SHM7688_01496 | P0ABV4 | Positive | 1544249 - 1544734 | 16765.5 |
| immunoglobulin a1 protease autotransporter precursor | SHM7688_01497 | Not Available | Positive | 1544744 - 1545841 | 38367.5 |
| translocation protein tolb | SHM7688_01498 | Q1GE19 | Positive | 1545838 - 1547163 | 47850.7 |
| minor outer membrane protein omp16 | SHM7688_01499 | Q926C3 | Positive | 1547282 - 1547794 | 17915.8 |
| tol-pal system protein ybgf | SHM7688_01500 | Not Available | Positive | 1547801 - 1548643 | 29301.5 |
| trna(ile)-lysidine synthase | SHM7688_01501 | Q5LNU7 | Positive | 1548634 - 1549842 | 43544.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
