Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trehalose import atp-binding protein sugc | SHM7688_01482 | Q1GID1 | Positive | 1530850 - 1531962 | 40445.8 |
| 6'''-hydroxyparomomycin c oxidase | SHM7688_01483 | Q3YAT3 | Positive | 1531962 - 1533455 | 53437.3 |
| 3-oxoacyl-[acyl-carrier-protein] reductase fabg | SHM7688_01484 | P23238 | Positive | 1533452 - 1534210 | 26338.9 |
| choline dehydrogenase | SHM7688_01485 | Q47944 | Positive | 1534220 - 1535812 | 56937.9 |
| stress responsive a/b barrel domain protein | SHM7688_01486 | Not Available | Positive | 1535809 - 1536117 | 11168.1 |
| hypothetical protein | SHM7688_01487 | Not Available | Positive | 1536144 - 1537304 | 41663.6 |
| maltose regulon regulatory protein mali | SHM7688_01488 | Q9K6K2 | Positive | 1537317 - 1538324 | 36060.3 |
| putative hydroxypyruvate reductase | SHM7688_01489 | Q44472 | Positive | 1538336 - 1539580 | 42123.5 |
| benzil reductase ((s)-benzoin forming) | SHM7688_01490 | Q8RJB2 | Positive | 1539662 - 1540381 | 24623.3 |
| abc-type sugar transport system, auxiliary component | SHM7688_01491 | D5MTT1 | Positive | 1540528 - 1541214 | 25286.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
