Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acetophenone carboxylase delta subunit | SHM7688_01472 | Q58373 | Negative | 1517746 - 1519452 | 60501.9 |
| acetophenone carboxylase gamma subunit | SHM7688_01473 | Q58374 | Negative | 1519449 - 1521536 | 74129.7 |
| hth-type transcriptional activator cmpr | SHM7688_01474 | Not Available | Negative | 1521648 - 1522580 | 34058.2 |
| 1,5-anhydro-d-fructose reductase | SHM7688_01475 | Q92KZ3 | Positive | 1522801 - 1523802 | 34428.8 |
| acetate coa-transferase ydif | SHM7688_01476 | F1CYZ5 | Positive | 1523799 - 1525370 | 56057.4 |
| 2,3-dehydroadipyl-coa hydratase | SHM7688_01477 | A4YI89 | Positive | 1525367 - 1526134 | 27046.6 |
| betaine aldehyde dehydrogenase | SHM7688_01478 | P71016 | Positive | 1526138 - 1527670 | 53957.2 |
| hypothetical protein | SHM7688_01479 | Q92KZ7 | Positive | 1527706 - 1528956 | 43516.8 |
| lactose transport system permease protein lacf | SHM7688_01480 | O58968 | Positive | 1529069 - 1529962 | 33581.5 |
| l-arabinose transport system permease protein araq | SHM7688_01481 | O58967 | Positive | 1529962 - 1530843 | 32262.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
