Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| inner membrane abc transporter permease protein ycjo | SHM7688_01462 | Not Available | Positive | 1506042 - 1507277 | 45296.5 |
| inner membrane abc transporter permease protein ycjp | SHM7688_01463 | P77716 | Positive | 1507277 - 1508485 | 43862.3 |
| hypothetical protein | SHM7688_01464 | D8T3S4 | Positive | 1508490 - 1509734 | 46553.8 |
| maltose/maltodextrin import atp-binding protein malk | SHM7688_01465 | Not Available | Positive | 1509692 - 1510795 | 39753.0 |
| thiamine biosynthesis lipoprotein apbe precursor | SHM7688_01466 | Not Available | Positive | 1511042 - 1511935 | 30067.9 |
| ribose and galactose chemoreceptor protein | SHM7688_01467 | P02941 | Positive | 1512142 - 1513596 | 51974.8 |
| nnrs protein | SHM7688_01468 | Not Available | Positive | 1513721 - 1514902 | 42256.1 |
| dtdp-glucose 4,6-dehydratase | SHM7688_01469 | Q88NN6 | Negative | 1514929 - 1515768 | 30163.8 |
| 4-hydroxy-2-oxo-heptane-1,7-dioate aldolase | SHM7688_01470 | B5FR34 | Negative | 1515765 - 1516529 | 26894.3 |
| hydrogen cyanide synthase subunit hcnc precursor | SHM7688_01471 | Q6DCP1 | Negative | 1516529 - 1517746 | 44830.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
