Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phage-related protein | SHM7688_01452 | Not Available | Negative | 1490654 - 1492114 | 52033.1 |
| reverse transcriptase (rna-dependent dna polymerase) | SHM7688_01453 | Not Available | Negative | 1492532 - 1493602 | 41581.1 |
| aconitate hydratase 2 | SHM7688_01454 | P36683 | Negative | 1494028 - 1496817 | 100313.0 |
| hemin import atp-binding protein hmuv | SHM7688_01455 | Q98L75 | Negative | 1497131 - 1497901 | 27142.6 |
| hemin transport system permease protein hmuu | SHM7688_01456 | Q56992 | Negative | 1497911 - 1498978 | 36665.1 |
| hemin-binding periplasmic protein hmut precursor | SHM7688_01457 | Q56991 | Negative | 1498982 - 1499875 | 30689.3 |
| hemin transport protein hems | SHM7688_01458 | Not Available | Negative | 1499872 - 1500942 | 39292.1 |
| colicin i receptor precursor | SHM7688_01459 | P17315 | Positive | 1501263 - 1503260 | 71284.8 |
| raffinose operon repressor | SHM7688_01460 | Q9Z3R4 | Positive | 1503410 - 1504591 | 42756.5 |
| maltose-binding periplasmic proteins/domains | SHM7688_01461 | Not Available | Positive | 1504617 - 1505969 | 48158.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
