Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SHM7688_01442 | Not Available | Negative | 1478595 - 1478879 | 10678.6 |
| transposase | SHM7688_01443 | Q46087 | Positive | 1478956 - 1480485 | 58558.2 |
| transposase/is protein | SHM7688_01444 | P15026 | Positive | 1480475 - 1481266 | 28837.8 |
| putative dna helicase | SHM7688_01445 | Not Available | Positive | 1481326 - 1482138 | 29058.7 |
| putative dna helicase | SHM7688_01446 | Q5ZKD7 | Positive | 1482190 - 1482846 | 23669.3 |
| hypothetical protein | SHM7688_01447 | Not Available | Positive | 1482843 - 1483508 | 26110.8 |
| hypothetical protein | SHM7688_01448 | Not Available | Negative | 1483570 - 1485027 | 54844.5 |
| n-formylmethionyl-trna deformylase | SHM7688_01449 | A7ZI07 | Negative | 1485059 - 1488274 | 120157.0 |
| hypothetical protein | SHM7688_01450 | Not Available | Negative | 1488274 - 1489584 | 49751.1 |
| outer membrane porin f precursor | SHM7688_01451 | Not Available | Negative | 1489581 - 1490657 | 39343.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
