Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| vibriobactin utilization protein viub | SHM7688_01422 | Not Available | Negative | 1461454 - 1462215 | 27817.1 |
| hypothetical protein | SHM7688_01423 | Not Available | Positive | 1462395 - 1462982 | 22181.1 |
| superoxide dismutase | SHM7688_01424 | O30970 | Negative | 1463036 - 1463635 | 22052.7 |
| hypothetical protein | SHM7688_01425 | Not Available | Negative | 1463761 - 1464162 | 14864.9 |
| sarcosine oxidase, gamma subunit family | SHM7688_01426 | Not Available | Negative | 1464272 - 1464838 | 19654.4 |
| aminomethyltransferase | SHM7688_01427 | Q9AGP1 | Negative | 1464831 - 1466051 | 45492.8 |
| hypothetical protein | SHM7688_01428 | Not Available | Positive | 1466261 - 1467616 | 50065.1 |
| sarcosine oxidase, delta subunit family | SHM7688_01429 | Not Available | Negative | 1467904 - 1468233 | 12588.7 |
| hypothetical protein | SHM7688_01430 | Not Available | Positive | 1468428 - 1468688 | 10490.3 |
| sarcosine oxidase subunit beta | SHM7688_01431 | Q52671 | Negative | 1468682 - 1469989 | 47314.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
