Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SHM7688_01402 | Not Available | Negative | 1441704 - 1442318 | 23133.0 |
| bile acid 7-dehydroxylase 1/3 | SHM7688_01403 | O70351 | Negative | 1442390 - 1443145 | 25814.0 |
| tyrosine--trna ligase | SHM7688_01404 | Q5LQK5 | Negative | 1443351 - 1444604 | 45687.6 |
| acetoin dehydrogenase e2 subunit dihydrolipoyllysine-residue acetyltransferase | SHM7688_01405 | Not Available | Positive | 1444835 - 1446580 | 64962.8 |
| hypothetical protein | SHM7688_01406 | Not Available | Positive | 1446677 - 1447021 | 12658.9 |
| anhydro-n-acetylmuramic acid kinase | SHM7688_01407 | Q5LQK6 | Positive | 1447227 - 1448336 | 38062.4 |
| fatty acid desaturase | SHM7688_01408 | Not Available | Negative | 1448344 - 1449252 | 34376.0 |
| hypothetical protein | SHM7688_01409 | Not Available | Negative | 1449249 - 1449686 | 15647.3 |
| alpha/beta hydrolase family protein | SHM7688_01410 | Not Available | Negative | 1449747 - 1450643 | 33036.1 |
| hypothetical protein | SHM7688_01411 | Not Available | Negative | 1450806 - 1451441 | 23578.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
