Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pimelyl-[acyl-carrier protein] methyl ester esterase | SHM7688_01392 | Not Available | Positive | 1434134 - 1434937 | 28047.0 |
| putative ester cyclase | SHM7688_01393 | Not Available | Negative | 1435006 - 1435488 | 17372.4 |
| putative hth-type transcriptional regulator yybr | SHM7688_01394 | O27346 | Positive | 1435575 - 1435934 | 13515.6 |
| hypothetical protein | SHM7688_01395 | Not Available | Negative | 1435954 - 1436526 | 21129.8 |
| low specificity l-threonine aldolase | SHM7688_01396 | Q9HTF1 | Negative | 1436676 - 1437725 | 37593.5 |
| hypothetical protein | SHM7688_01397 | O68068 | Negative | 1437725 - 1438201 | 18127.5 |
| riboflavin biosynthesis protein ribf | SHM7688_01398 | P73651 | Negative | 1438198 - 1439130 | 33535.8 |
| (r)-specific enoyl-coa hydratase | SHM7688_01399 | Q2RQ36 | Negative | 1439358 - 1439801 | 16109.5 |
| putative hydrolase yutf | SHM7688_01400 | Not Available | Negative | 1439903 - 1440778 | 31382.4 |
| hypothetical protein | SHM7688_01401 | Not Available | Negative | 1440881 - 1441615 | 27374.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
