Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-pro | Not Available | Not Available | Positive | 1414844 - 1414920 | Not Available |
| merr family regulatory protein | SHM7688_01373 | P30791 | Negative | 1414996 - 1416243 | 44168.5 |
| integration host factor subunit alpha | SHM7688_01374 | Q1GI70 | Negative | 1416259 - 1416561 | 11058.4 |
| 3-oxoacyl-[acyl-carrier-protein] synthase 3 | SHM7688_01375 | Q1GI69 | Negative | 1416701 - 1417675 | 34525.1 |
| phosphate acyltransferase | SHM7688_01376 | Q1GI68 | Negative | 1417699 - 1418787 | 38474.1 |
| 50s ribosomal protein l32 | SHM7688_01377 | Q1GI67 | Negative | 1418808 - 1419014 | 7521.71 |
| hypothetical protein | SHM7688_01378 | Not Available | Negative | 1419153 - 1419713 | 20449.1 |
| smpa / omla family protein | SHM7688_01379 | Not Available | Positive | 1419825 - 1420298 | 16721.0 |
| hypothetical protein | SHM7688_01380 | D5AQD6 | Positive | 1420395 - 1421141 | 27919.0 |
| abc transporter atp-binding protein uup | SHM7688_01381 | Q45978 | Positive | 1421174 - 1422985 | 66723.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
