Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| exodeoxyribonuclease iii | SHM7688_01362 | Not Available | Negative | 1405509 - 1406288 | 29468.0 |
| iron-sulfur cluster insertion protein erpa | SHM7688_01363 | Q60AU6 | Negative | 1406388 - 1406711 | 11370.5 |
| deoxyguanosinetriphosphate triphosphohydrolase | SHM7688_01364 | Q1GI81 | Positive | 1406805 - 1407944 | 42746.7 |
| arginine--trna ligase | SHM7688_01365 | Q5LQI6 | Positive | 1408020 - 1409765 | 63949.1 |
| sporulation related domain protein | SHM7688_01366 | Not Available | Positive | 1409855 - 1410874 | 35011.9 |
| beta-hexosaminidase | SHM7688_01367 | Q0A911 | Positive | 1410871 - 1411854 | 35639.1 |
| segregation and condensation protein a | SHM7688_01368 | Q9PAP4 | Positive | 1411879 - 1412682 | 30558.9 |
| hypothetical protein | SHM7688_01369 | A4J3L6 | Positive | 1412672 - 1413376 | 25872.8 |
| hypothetical protein | SHM7688_01370 | Not Available | Positive | 1413471 - 1413683 | 7844.58 |
| 2'-deoxycytidine 5'-triphosphate deaminase | SHM7688_01371 | Not Available | Negative | 1413709 - 1414785 | 39010.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
