Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| copper-transporting p-type atpase | SHM7688_01342 | Q9X5X3 | Positive | 1381679 - 1384129 | 84381.9 |
| copper export regulator | SHM7688_01343 | Q9X5V4 | Positive | 1384129 - 1384515 | 14124.9 |
| zinc transporter zupt | SHM7688_01344 | Not Available | Positive | 1384571 - 1385284 | 23940.1 |
| hypothetical protein | SHM7688_01345 | Not Available | Negative | 1385371 - 1385925 | 20536.6 |
| 2-isopropylmalate synthase | SHM7688_01346 | A4YZ76 | Negative | 1385969 - 1387534 | 56545.1 |
| c signal | SHM7688_01347 | Not Available | Positive | 1388001 - 1388660 | 22837.2 |
| trna(1-methyladenosine) methyltransferase | SHM7688_01348 | Not Available | Negative | 1388718 - 1390124 | 49970.0 |
| hypothetical protein | SHM7688_01349 | Not Available | Positive | 1390182 - 1390361 | 6535.08 |
| glutamine-dependent nad(+) synthetase | SHM7688_01350 | Q03638 | Positive | 1390340 - 1391998 | 60823.6 |
| putative diguanylate cyclase ydam | SHM7688_01351 | Q8X8Q3 | Positive | 1392165 - 1392869 | 25053.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
