Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SHM7688_01332 | Not Available | Positive | 1370143 - 1370655 | 19045.1 |
| hypothetical protein | SHM7688_01333 | Not Available | Positive | 1370652 - 1370849 | 7021.75 |
| morphology and auto-aggregation control protein | SHM7688_01334 | P0ACQ6 | Negative | 1370876 - 1371799 | 34054.4 |
| catalase-peroxidase | SHM7688_01335 | A1K9V0 | Positive | 1371910 - 1374093 | 78774.9 |
| hypothetical protein | SHM7688_01336 | Not Available | Negative | 1374262 - 1374999 | 25520.7 |
| hypothetical protein | SHM7688_01337 | Not Available | Negative | 1375290 - 1375862 | 21230.0 |
| arylsulfatase | SHM7688_01338 | Q32KH5 | Negative | 1376127 - 1377683 | 57101.7 |
| cyn operon transcriptional activator | SHM7688_01339 | Not Available | Positive | 1377848 - 1378765 | 33535.4 |
| glucokinase | SHM7688_01340 | Q32DF7 | Negative | 1378813 - 1379754 | 33146.0 |
| cytochrome c551 peroxidase precursor | SHM7688_01341 | Q49128 | Negative | 1379993 - 1381309 | 47646.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
