Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| prolipoprotein diacylglyceryl transferase | SHM7688_01322 | Not Available | Negative | 1360867 - 1361787 | 33246.3 |
| hypothetical protein | SHM7688_01323 | Not Available | Negative | 1361893 - 1362279 | 13931.8 |
| ef hand | SHM7688_01324 | Not Available | Negative | 1362419 - 1363012 | 20607.9 |
| hypothetical protein | SHM7688_01325 | Not Available | Positive | 1363338 - 1363967 | 22324.6 |
| hypothetical protein | SHM7688_01326 | Not Available | Negative | 1364044 - 1364214 | 6079.28 |
| dna binding domain, excisionase family | SHM7688_01327 | Not Available | Negative | 1364360 - 1364560 | 7401.91 |
| prophage cp4-57 integrase | SHM7688_01328 | Not Available | Negative | 1364825 - 1365844 | 38299.3 |
| hypothetical protein | SHM7688_01329 | Not Available | Negative | 1366474 - 1366632 | 5635.35 |
| methionine--trna ligase | SHM7688_01330 | Q1GEI7 | Negative | 1366812 - 1368527 | 64330.0 |
| putative mfs-type transporter ycad | SHM7688_01331 | Not Available | Negative | 1368722 - 1369969 | 44194.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
