Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SHM7688_01312 | Not Available | Positive | 1350653 - 1350820 | 5812.35 |
| manganese transport regulator | SHM7688_01313 | Not Available | Negative | 1350915 - 1351373 | 17064.2 |
| hypothetical protein | SHM7688_01314 | Not Available | Positive | 1351471 - 1351746 | 10046.1 |
| putative cadmium-transporting atpase | SHM7688_01315 | Q6GIX1 | Negative | 1351740 - 1354094 | 81359.5 |
| hypothetical protein | SHM7688_01316 | Not Available | Positive | 1354287 - 1354559 | 9358.1 |
| putative l,d-transpeptidase ynhg precursor | SHM7688_01317 | Not Available | Negative | 1354607 - 1355272 | 24546.1 |
| thiol:disulfide interchange protein dsbd precursor | SHM7688_01318 | Not Available | Negative | 1355466 - 1356314 | 29727.2 |
| hypothetical protein | SHM7688_01319 | Not Available | Positive | 1356405 - 1357049 | 22922.7 |
| inner membrane transport protein ybat | SHM7688_01320 | Not Available | Negative | 1357057 - 1358394 | 46488.7 |
| copper-transporting p-type atpase | SHM7688_01321 | Q9X5V3 | Negative | 1358443 - 1360788 | 82944.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
