Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sco1/senc | SHM7688_01302 | A6H784 | Positive | 1343198 - 1343767 | 20856.6 |
| thiol-disulfide oxidoreductase c | SHM7688_01303 | Q8GHM3 | Positive | 1343773 - 1344195 | 15012.9 |
| thiol-disulfide oxidoreductase d | SHM7688_01304 | Not Available | Positive | 1344192 - 1344851 | 23443.1 |
| hypothetical protein | SHM7688_01305 | Not Available | Positive | 1344874 - 1345344 | 16102.5 |
| sco1/senc | SHM7688_01306 | O43819 | Positive | 1345344 - 1345970 | 23008.2 |
| murein hydrolase activator nlpd precursor | SHM7688_01307 | Not Available | Positive | 1345967 - 1347340 | 48858.0 |
| protein of unknown function, duf | SHM7688_01308 | Not Available | Positive | 1347344 - 1347802 | 16390.6 |
| zinc transporter zupt | SHM7688_01309 | Q06916 | Positive | 1347825 - 1348607 | 26606.0 |
| lipoprotein signal peptidase | SHM7688_01310 | Not Available | Positive | 1348612 - 1349085 | 16871.0 |
| apolipoprotein n-acyltransferase | SHM7688_01311 | Not Available | Positive | 1349082 - 1350653 | 55739.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
