Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cadmium, cobalt and zinc/h(+)-k(+) antiporter | SHM7688_01292 | Not Available | Positive | 1335434 - 1336288 | 29994.4 |
| lipoprotein signal peptidase | SHM7688_01293 | B4RVP1 | Positive | 1336285 - 1336794 | 18354.3 |
| trap-type mannitol/chloroaromatic compound transport system, small permease component | SHM7688_01294 | Not Available | Positive | 1336832 - 1337353 | 19318.0 |
| neu5ac permease | SHM7688_01295 | Not Available | Positive | 1337343 - 1338716 | 48432.2 |
| hypothetical protein | SHM7688_01296 | Not Available | Negative | 1338936 - 1339631 | 26146.9 |
| hypothetical protein | SHM7688_01297 | Not Available | Negative | 1339985 - 1340296 | 11497.7 |
| cadmium, cobalt and zinc/h(+)-k(+) antiporter | SHM7688_01298 | P13512 | Negative | 1340268 - 1341233 | 35211.5 |
| transglutaminase-like superfamily protein | SHM7688_01299 | Not Available | Negative | 1341223 - 1341786 | 21311.6 |
| cadmium, cobalt and zinc/h(+)-k(+) antiporter | SHM7688_01300 | Not Available | Negative | 1341856 - 1342476 | 21815.3 |
| zn(ii)-responsive regulator of znta | SHM7688_01301 | P0ACS6 | Negative | 1342559 - 1342987 | 16019.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
