Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SHM7688_01272 | Not Available | Negative | 1322076 - 1322489 | 15459.3 |
| hypothetical protein | SHM7688_01273 | Not Available | Negative | 1322486 - 1322680 | 7250.56 |
| type iv secretion system protein virb11 | SHM7688_01274 | Q9RNC7 | Negative | 1322677 - 1323663 | 35818.1 |
| pertussis toxin liberation protein g | SHM7688_01275 | Q7W2T8 | Negative | 1323668 - 1325047 | 49091.7 |
| type iv secretion system protein virb9 precursor | SHM7688_01276 | Not Available | Negative | 1325044 - 1325739 | 25518.0 |
| type iv secretion system protein virb8 | SHM7688_01277 | Not Available | Negative | 1325741 - 1326394 | 24233.8 |
| p-type dna transfer protein virb5 | SHM7688_01278 | Not Available | Negative | 1326411 - 1327220 | 29002.2 |
| soluble lytic murein transglycosylase precursor | SHM7688_01279 | Not Available | Negative | 1327217 - 1328383 | 41520.3 |
| hypothetical protein | SHM7688_01280 | Not Available | Negative | 1328364 - 1328531 | 5682.79 |
| type iv secretion system protein virb4 | SHM7688_01281 | Not Available | Negative | 1328528 - 1330903 | 88568.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
