Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| di-heme enzyme, family | SHM7688_01262 | Not Available | Positive | 1310508 - 1312361 | 66794.2 |
| phosphate-import protein phnd precursor | SHM7688_01263 | Not Available | Positive | 1312361 - 1313221 | 30972.8 |
| phosphate-import atp-binding protein phnc | SHM7688_01264 | Q2IYS5 | Positive | 1313218 - 1313988 | 27981.4 |
| phosphate-import permease protein phne | SHM7688_01265 | A0A140NFA3 | Positive | 1313988 - 1314731 | 26261.1 |
| l,d-transpeptidase catalytic domain | SHM7688_01266 | Not Available | Negative | 1314972 - 1315481 | 18597.3 |
| putative cadmium-transporting atpase | SHM7688_01267 | Not Available | Negative | 1315543 - 1317912 | 82038.6 |
| hypothetical protein | SHM7688_01268 | Not Available | Positive | 1318076 - 1318348 | 9573.52 |
| putative l,d-transpeptidase ynhg precursor | SHM7688_01269 | Not Available | Negative | 1318422 - 1319084 | 24159.6 |
| transposase dde domain protein | SHM7688_01270 | Not Available | Negative | 1319473 - 1320858 | 52550.5 |
| trbl/virb6 plasmid conjugal transfer protein | SHM7688_01271 | Not Available | Negative | 1320987 - 1322063 | 37201.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
