Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadh-quinone oxidoreductase subunit b | SHM7688_00092 | Q5LPR4 | Negative | 93477 - 94010 | 19514.7 |
| nad(p)h-quinone oxidoreductase subunit 3 | SHM7688_00093 | P29919 | Negative | 94001 - 94366 | 13950.4 |
| putative enoyl-coa hydratase echa8 | SHM7688_00094 | C5NN19 | Negative | 94888 - 95673 | 27580.5 |
| hydroxymethylglutaryl-coa lyase yngg | SHM7688_00095 | Q9I2A0 | Negative | 95692 - 96555 | 30068.7 |
| glutathione s-transferase gst-6.0 | SHM7688_00096 | Not Available | Negative | 96559 - 97224 | 24448.6 |
| acetyl-/propionyl-coenzyme a carboxylase alpha chain | SHM7688_00097 | Q42523 | Negative | 97221 - 99173 | 68799.0 |
| methylmalonyl-coa carboxyltransferase 12s subunit | SHM7688_00098 | Q3ULD5 | Negative | 99257 - 100861 | 57255.6 |
| outer membrane protein w precursor | SHM7688_00099 | P0A915 | Positive | 100894 - 101685 | 28152.2 |
| acyl-coa dehydrogenase | SHM7688_00100 | P12007 | Negative | 101769 - 102932 | 42209.8 |
| dna-damage-inducible protein f | SHM7688_00101 | P28303 | Negative | 103092 - 104426 | 47308.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
