Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thiol-disulfide oxidoreductase d | SHM7688_01252 | Q0SG15 | Positive | 1303161 - 1303820 | 23570.5 |
| hypothetical protein | SHM7688_01253 | Not Available | Positive | 1303843 - 1304307 | 16010.2 |
| sco1/senc | SHM7688_01254 | Q5RH02 | Positive | 1304307 - 1304939 | 23327.5 |
| glycyl-glycine endopeptidase ale-1 precursor | SHM7688_01255 | Not Available | Positive | 1304929 - 1306302 | 48381.3 |
| protein of unknown function, duf | SHM7688_01256 | Not Available | Positive | 1306306 - 1306761 | 16247.7 |
| lipoprotein signal peptidase | SHM7688_01257 | Q2NVY5 | Positive | 1306861 - 1307343 | 17045.0 |
| putative metal-binding protein | SHM7688_01258 | Not Available | Positive | 1307609 - 1307944 | 12426.1 |
| cobalt transporter subunit cbta (proposed) | SHM7688_01259 | Not Available | Positive | 1308437 - 1309210 | 26812.1 |
| hypothetical protein | SHM7688_01260 | Not Available | Positive | 1309279 - 1309782 | 17530.5 |
| manganese transport regulator | SHM7688_01261 | Q8X7U4 | Negative | 1309921 - 1310370 | 16939.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
