Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SHM7688_01242 | Not Available | Positive | 1292378 - 1293394 | 37220.7 |
| hypothetical protein | SHM7688_01243 | Not Available | Positive | 1293934 - 1294140 | 7699.05 |
| hypothetical protein | SHM7688_01244 | Not Available | Positive | 1294560 - 1295237 | 24870.0 |
| type iv secretion system t-dna border endonuclease vird2 | SHM7688_01245 | P18592 | Positive | 1295224 - 1297575 | 88062.7 |
| conjugal transfer protein trag | SHM7688_01246 | Not Available | Positive | 1297584 - 1299584 | 72902.8 |
| cation efflux system protein czcd | SHM7688_01247 | O07084 | Negative | 1299757 - 1300695 | 33758.9 |
| putative protein involved in cytokinesis, contains tgc (transglutaminase/protease-like) domain | SHM7688_01248 | Not Available | Negative | 1300685 - 1301446 | 28195.5 |
| zn(ii)-responsive regulator of znta | SHM7688_01249 | P13111 | Negative | 1301538 - 1301966 | 16242.6 |
| sco1/senc | SHM7688_01250 | Not Available | Positive | 1302137 - 1302736 | 22100.9 |
| thiol-disulfide oxidoreductase c | SHM7688_01251 | Not Available | Positive | 1302742 - 1303164 | 14966.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
