Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SHM7688_01202 | Not Available | Positive | 1254938 - 1255207 | 9543.33 |
| putative l,d-transpeptidase ynhg precursor | SHM7688_01203 | Not Available | Negative | 1255242 - 1255910 | 24458.1 |
| thiol-disulfide oxidoreductase d | SHM7688_01204 | A1SHU2 | Negative | 1255965 - 1256693 | 26540.8 |
| putative bifunctional cbb3-type cytochrome c oxidase subunit ii/cytochrome c | SHM7688_01205 | Not Available | Negative | 1256704 - 1257180 | 17099.9 |
| copper resistance protein a precursor | SHM7688_01206 | Q12570 | Negative | 1257177 - 1258562 | 50018.7 |
| putative bifunctional cbb3-type cytochrome c oxidase subunit ii/cytochrome c | SHM7688_01207 | Not Available | Negative | 1258761 - 1259201 | 15446.5 |
| putative l,d-transpeptidase erfk/srfk precursor | SHM7688_01208 | Not Available | Negative | 1259201 - 1259770 | 21573.7 |
| osmolarity sensor protein envz | SHM7688_01209 | Q9HZ47 | Negative | 1259892 - 1261337 | 51817.4 |
| transcriptional regulatory protein ompr | SHM7688_01210 | Not Available | Negative | 1261343 - 1262071 | 26322.7 |
| hypothetical protein | SHM7688_01211 | Not Available | Positive | 1262317 - 1262703 | 13861.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
