Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| copper resistance protein b precursor | SHM7688_01182 | Not Available | Positive | 1234206 - 1234910 | 25743.1 |
| transposase | SHM7688_01183 | Not Available | Positive | 1235320 - 1235724 | 14327.3 |
| transposase | SHM7688_01184 | P55503 | Positive | 1235721 - 1236074 | 13342.2 |
| transposase | SHM7688_01185 | P55630 | Positive | 1236129 - 1237445 | 48825.1 |
| hypothetical protein | SHM7688_01186 | Not Available | Positive | 1237746 - 1238387 | 22771.6 |
| disulfide bond formation protein b | SHM7688_01187 | Not Available | Negative | 1238384 - 1238899 | 17792.9 |
| periplasmic copper-binding protein | SHM7688_01188 | Not Available | Negative | 1239001 - 1239342 | 11932.5 |
| cation efflux system protein cusa | SHM7688_01189 | Q8FK36 | Negative | 1239376 - 1242558 | 116286.0 |
| cation efflux system protein cusb precursor | SHM7688_01190 | Q8XEH9 | Negative | 1242555 - 1244750 | 77648.0 |
| hypothetical protein | SHM7688_01191 | Not Available | Positive | 1244933 - 1245259 | 11713.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
