Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| osmolarity sensor protein envz | SHM7688_01172 | Not Available | Negative | 1223743 - 1225212 | 53917.9 |
| transcriptional regulatory protein ompr | SHM7688_01173 | P0AA18 | Negative | 1225209 - 1225931 | 26499.3 |
| hypothetical protein | SHM7688_01174 | Not Available | Negative | 1226143 - 1227504 | 50909.6 |
| alcohol dehydrogenase cytochrome c subunit precursor | SHM7688_01175 | M1V1V5 | Negative | 1227834 - 1228733 | 31663.3 |
| cytochrome c556 | SHM7688_01176 | Not Available | Negative | 1228735 - 1229304 | 19696.8 |
| hypothetical protein | SHM7688_01177 | Not Available | Negative | 1229420 - 1229878 | 16242.4 |
| nhlm bacteriocin system abc transporter, peptidase/atp-binding protein | SHM7688_01178 | Not Available | Negative | 1229878 - 1231140 | 47182.2 |
| periplasmic copper-binding protein | SHM7688_01179 | Not Available | Negative | 1231199 - 1231483 | 10092.5 |
| hypothetical protein | SHM7688_01180 | Not Available | Positive | 1231836 - 1232177 | 12165.6 |
| copper resistance protein a precursor | SHM7688_01181 | Q47452 | Positive | 1232364 - 1234178 | 66854.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
