Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SHM7688_00082 | Not Available | Negative | 85393 - 85809 | 14614.2 |
| nadh-quinone oxidoreductase chain 3 | SHM7688_00083 | P29915 | Negative | 85818 - 87830 | 71601.8 |
| hypothetical protein | SHM7688_00084 | Not Available | Negative | 87833 - 88237 | 15050.1 |
| hypothetical protein | SHM7688_00085 | Not Available | Negative | 88341 - 88724 | 13779.3 |
| nadh-quinone oxidoreductase chain 1 | SHM7688_00086 | P29913 | Negative | 88734 - 90032 | 47406.7 |
| hypothetical protein | SHM7688_00087 | Not Available | Negative | 90037 - 90264 | 8258.23 |
| nadh-quinone oxidoreductase chain 2 | SHM7688_00088 | P29914 | Negative | 90268 - 91368 | 39336.6 |
| nadh-quinone oxidoreductase subunit d | SHM7688_00089 | Q1GIN9 | Negative | 91368 - 92594 | 46333.9 |
| hypothetical protein | SHM7688_00090 | Not Available | Positive | 92630 - 92839 | 7352.76 |
| nadh-quinone oxidoreductase chain 5 | SHM7688_00091 | Q5LPR5 | Negative | 92872 - 93480 | 23576.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
