Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative l,d-transpeptidase ynhg precursor | SHM7688_01152 | Not Available | Negative | 1205032 - 1205613 | 21985.5 |
| hypothetical protein | SHM7688_01153 | Not Available | Positive | 1205793 - 1206629 | 30278.4 |
| glutaredoxin 3 | SHM7688_01154 | Not Available | Positive | 1206642 - 1207406 | 28507.6 |
| copper export regulator | SHM7688_01155 | Not Available | Negative | 1207428 - 1207826 | 15025.0 |
| copper-transporting p-type atpase | SHM7688_01156 | Not Available | Negative | 1207839 - 1210349 | 86795.7 |
| copper ion binding protein | SHM7688_01157 | Not Available | Positive | 1210502 - 1210702 | 6798.07 |
| thiol-disulfide oxidoreductase d | SHM7688_01158 | Q9S2C8 | Negative | 1210745 - 1211476 | 27090.3 |
| gluconate 2-dehydrogenase cytochrome c subunit precursor | SHM7688_01159 | Not Available | Negative | 1211478 - 1211960 | 17563.2 |
| multicopper oxidase mco | SHM7688_01160 | I1RMG9 | Negative | 1211957 - 1213351 | 51193.0 |
| g3-adh subunit ii | SHM7688_01161 | Q53143 | Negative | 1213395 - 1214312 | 32366.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
