Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iv secretion system protein virb9 precursor | SHM7688_01122 | Not Available | Positive | 1177057 - 1177752 | 25894.5 |
| pertussis toxin liberation protein g | SHM7688_01123 | P17800 | Positive | 1177745 - 1179055 | 46715.9 |
| type iv secretion system protein virb11 | SHM7688_01124 | Not Available | Positive | 1179058 - 1180053 | 36498.8 |
| hypothetical protein | SHM7688_01125 | Not Available | Positive | 1180046 - 1180228 | 6718.06 |
| trbl/virb6 plasmid conjugal transfer protein | SHM7688_01126 | Not Available | Positive | 1180243 - 1181241 | 34682.9 |
| retron-type reverse transcriptase | SHM7688_01127 | Not Available | Negative | 1181300 - 1182241 | 35667.5 |
| conjugal transfer protein trba | SHM7688_01128 | Not Available | Negative | 1182222 - 1182527 | 11377.8 |
| conjugal transfer protein trag | SHM7688_01129 | Not Available | Negative | 1183141 - 1185033 | 69795.3 |
| type iv secretion system t-dna border endonuclease vird2 | SHM7688_01130 | P06668 | Negative | 1185026 - 1186834 | 67022.9 |
| hypothetical protein | SHM7688_01131 | Not Available | Negative | 1186821 - 1187411 | 21862.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
