Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SHM7688_01112 | Not Available | Negative | 1169978 - 1170265 | 10666.8 |
| hypothetical protein | SHM7688_01113 | Not Available | Positive | 1170429 - 1170755 | 11623.9 |
| soluble lytic murein transglycosylase precursor | SHM7688_01114 | O31608 | Positive | 1170820 - 1171398 | 20429.2 |
| type iv secretion system protein virb2 precursor | SHM7688_01115 | Not Available | Positive | 1171398 - 1171688 | 10096.8 |
| type iv secretion system protein virb3 | SHM7688_01116 | Not Available | Positive | 1171696 - 1171974 | 10398.0 |
| type iv secretion system protein virb4 | SHM7688_01117 | Not Available | Positive | 1171964 - 1174330 | 87409.5 |
| hypothetical protein | SHM7688_01118 | Not Available | Positive | 1174323 - 1174481 | 5734.89 |
| soluble lytic murein transglycosylase precursor | SHM7688_01119 | Not Available | Positive | 1174474 - 1175622 | 41295.3 |
| p-type dna transfer protein virb5 | SHM7688_01120 | Not Available | Positive | 1175619 - 1176398 | 27829.7 |
| type iv secretion system protein virb8 | SHM7688_01121 | Not Available | Positive | 1176403 - 1177053 | 24176.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
