Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| chemotaxis protein motb | SHM7688_01092 | P0AF07 | Positive | 1148716 - 1149540 | 29780.7 |
| flagellar hook protein flge | SHM7688_01093 | Q8FUS9 | Positive | 1149668 - 1150972 | 45092.9 |
| flagellar hook-associated protein 1 | SHM7688_01094 | Not Available | Positive | 1151010 - 1152464 | 50835.7 |
| flagellar hook-associated protein flgl | SHM7688_01095 | Not Available | Positive | 1152469 - 1153485 | 35937.3 |
| basal body p-ring protein | SHM7688_01096 | Q5LWZ2 | Positive | 1153509 - 1154594 | 37715.4 |
| outer membrane protein (porin) | SHM7688_01097 | Not Available | Positive | 1154806 - 1155513 | 25408.3 |
| autoinducer 2 sensor kinase/phosphatase luxq | SHM7688_01098 | Q7MD16 | Negative | 1155575 - 1157857 | 83338.2 |
| multidrug resistance operon repressor | SHM7688_01099 | Not Available | Positive | 1158158 - 1158619 | 16845.5 |
| efflux pump periplasmic linker bepf | SHM7688_01100 | Not Available | Positive | 1158624 - 1159676 | 37393.5 |
| multidrug-efflux transporter mexb | SHM7688_01101 | P25197 | Positive | 1159688 - 1162741 | 110013.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
