Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| penicillin-binding protein f | SHM7688_01082 | P76577 | Positive | 1134210 - 1136252 | 73924.0 |
| beta-ketothiolase bktb | SHM7688_01083 | Q0KBP1 | Negative | 1136367 - 1137542 | 40453.6 |
| hth-type transcriptional regulator puur | SHM7688_01084 | P77626 | Positive | 1137594 - 1138259 | 23505.1 |
| 2-amino-3-ketobutyrate coenzyme a ligase | SHM7688_01085 | P0AB78 | Positive | 1138512 - 1139699 | 42530.3 |
| cysteine synthase | SHM7688_01086 | Q5HRP1 | Positive | 1139696 - 1140646 | 32402.1 |
| l-threonine 3-dehydrogenase | SHM7688_01087 | Q5LN53 | Positive | 1140651 - 1141700 | 37505.5 |
| fatty acid metabolism regulator protein | SHM7688_01088 | Not Available | Positive | 1141886 - 1142449 | 20597.6 |
| autotransporter assembly factor tamb | SHM7688_01089 | Not Available | Negative | 1142446 - 1145874 | 118440.0 |
| autotransporter assembly factor tama | SHM7688_01090 | Not Available | Negative | 1145874 - 1147640 | 62959.4 |
| 2-acyl-glycerophospho-ethanolamine acyltransferase | SHM7688_01091 | Not Available | Positive | 1147900 - 1148601 | 25819.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
