Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| inner membrane protein yhhq | SHM7688_01072 | P37619 | Negative | 1118653 - 1119288 | 22588.0 |
| hypothetical protein | SHM7688_01073 | Not Available | Negative | 1119386 - 1120291 | 33194.5 |
| penicillin-insensitive murein endopeptidase precursor | SHM7688_01074 | P44566 | Negative | 1120264 - 1121181 | 33680.1 |
| vacuole effluxer atg22 like protein | SHM7688_01075 | Not Available | Negative | 1121163 - 1122515 | 48405.7 |
| hypothetical protein | SHM7688_01076 | Not Available | Negative | 1122571 - 1123107 | 20528.9 |
| yggt family protein | SHM7688_01077 | Not Available | Positive | 1123234 - 1123518 | 10865.0 |
| atp-dependent dna helicase recq | SHM7688_01078 | P15043 | Positive | 1123614 - 1125653 | 74516.2 |
| hypothetical protein | SHM7688_01079 | Q5LWQ9 | Positive | 1125682 - 1126455 | 29365.2 |
| signal transduction histidine-protein kinase bara | SHM7688_01080 | Q5A599 | Negative | 1126458 - 1128626 | 80074.4 |
| hypothetical protein | SHM7688_01081 | P76578 | Positive | 1128773 - 1134208 | 194628.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
