Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| multidrug resistance protein | SHM7688_01062 | Not Available | Positive | 1108509 - 1109699 | 41479.4 |
| hypothetical protein | SHM7688_01063 | Q28K48 | Negative | 1109777 - 1109902 | 5040.33 |
| Trna-val | Not Available | Not Available | Positive | 1109980 - 1110054 | Not Available |
| n-formylglutamate deformylase | SHM7688_01065 | Not Available | Positive | 1110202 - 1111065 | 31462.4 |
| nicotinamidase/pyrazinamidase | SHM7688_01066 | P21369 | Positive | 1111187 - 1111783 | 21253.0 |
| aerobic respiration control sensor protein arcb | SHM7688_01067 | Not Available | Positive | 1111871 - 1114120 | 82606.8 |
| nicotinate phosphoribosyltransferase | SHM7688_01068 | B9J6S5 | Positive | 1114250 - 1115542 | 49689.5 |
| homoserine kinase | SHM7688_01069 | Not Available | Negative | 1115568 - 1116524 | 34505.9 |
| 4-aminobutyrate aminotransferase gabt | SHM7688_01070 | Q8BWU8 | Negative | 1116521 - 1117786 | 45308.9 |
| peptidyl-trna hydrolase yaej | SHM7688_01071 | P45388 | Negative | 1117862 - 1118284 | 15984.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
