Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative abc transporter atp-binding protein | SHM7688_01052 | P23886 | Positive | 1097234 - 1098856 | 56731.7 |
| cytochrome d ubiquinol oxidase subunit 1 | SHM7688_01053 | Q09049 | Positive | 1098983 - 1100641 | 61768.0 |
| cytochrome d ubiquinol oxidase subunit 2 | SHM7688_01054 | P0ABK4 | Positive | 1100647 - 1101810 | 42330.3 |
| cyd operon protein ybgt | SHM7688_01055 | Q2YKD6 | Positive | 1101823 - 1101957 | 5025.06 |
| camp regulatory protein | SHM7688_01056 | Not Available | Positive | 1102174 - 1102848 | 24974.0 |
| hypothetical protein | SHM7688_01057 | Not Available | Positive | 1102959 - 1103165 | 7135.15 |
| beta-lactamase hydrolase-like protein | SHM7688_01058 | Q54DK1 | Positive | 1103321 - 1105000 | 60485.6 |
| ubiquinol-cytochrome c reductase iron-sulfur subunit | SHM7688_01059 | Not Available | Positive | 1105553 - 1106113 | 19920.4 |
| cytochrome b | SHM7688_01060 | P05418 | Positive | 1106125 - 1107447 | 49876.5 |
| cytochrome c1 precursor | SHM7688_01061 | P13627 | Positive | 1107462 - 1108253 | 28482.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
