Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ubiquinone/menaquinone biosynthesis methyltransferase ubie | SHM7688_01042 | Q1GC56 | Negative | 1085693 - 1086442 | 27929.4 |
| formamidopyrimidine-dna glycosylase | SHM7688_01043 | Q5LWT9 | Positive | 1086668 - 1087519 | 31444.9 |
| putative enoyl-coa hydratase echa8 | SHM7688_01044 | Q52995 | Positive | 1087568 - 1088359 | 28614.5 |
| methylamine utilization protein maug precursor | SHM7688_01045 | Q51658 | Positive | 1088502 - 1089629 | 41070.1 |
| putative iron-regulated protein | SHM7688_01046 | Not Available | Positive | 1089782 - 1091044 | 44231.9 |
| putative thiol oxidoreductase | SHM7688_01047 | Not Available | Positive | 1091100 - 1092632 | 54937.6 |
| iron-regulated protein a precursor | SHM7688_01048 | Not Available | Positive | 1092636 - 1093664 | 36773.4 |
| hypothetical protein | SHM7688_01049 | Not Available | Positive | 1093666 - 1094736 | 37482.5 |
| hypothetical protein | SHM7688_01050 | Not Available | Positive | 1094863 - 1095501 | 23344.3 |
| atp-binding/permease protein cydd | SHM7688_01051 | P29018 | Positive | 1095567 - 1097237 | 58345.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
