Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| udp-glucose 4-epimerase | SHM7688_01012 | P26503 | Positive | 1057347 - 1058330 | 35901.2 |
| glycosyltransferase, family | SHM7688_01013 | Not Available | Positive | 1058290 - 1059585 | 47362.3 |
| hypothetical protein | SHM7688_01014 | Not Available | Positive | 1059637 - 1060647 | 39786.4 |
| core-2/i-branching enzyme | SHM7688_01015 | Not Available | Positive | 1060644 - 1062341 | 65102.0 |
| sulfotransferase family protein | SHM7688_01016 | Not Available | Positive | 1062348 - 1063772 | 54218.8 |
| nitrogen regulatory protein | SHM7688_01017 | P30335 | Negative | 1063842 - 1064306 | 16575.1 |
| sigl modulation protein | SHM7688_01018 | P30334 | Negative | 1064348 - 1064917 | 21052.0 |
| lipopolysaccharide export system atp-binding protein lptb | SHM7688_01019 | P33982 | Negative | 1065197 - 1065955 | 28182.2 |
| lps assembly outer membrane complex protein lptd | SHM7688_01020 | Not Available | Negative | 1065958 - 1066440 | 16869.2 |
| hypothetical protein | SHM7688_01021 | Not Available | Negative | 1066444 - 1067055 | 22120.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
