Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-ketoglutarate-dependent dioxygenase alkb | SHM7688_01002 | P0CAT7 | Positive | 1046690 - 1047319 | 22797.5 |
| putative membrane protein | SHM7688_01003 | Not Available | Negative | 1047355 - 1047933 | 20986.1 |
| vi polysaccharide export inner membrane protein vexb | SHM7688_01004 | Not Available | Negative | 1047930 - 1048751 | 30317.2 |
| 3'(2'),5'-bisphosphate nucleotidase cysq | SHM7688_01005 | Q8XCG6 | Positive | 1048868 - 1049665 | 28985.2 |
| 3-deoxy-manno-octulosonate cytidylyltransferase | SHM7688_01006 | Not Available | Positive | 1049665 - 1050465 | 28746.0 |
| mycofactocin system glycosyltransferase | SHM7688_01007 | Not Available | Positive | 1050462 - 1051760 | 47133.9 |
| udp-glucose 4-epimerase | SHM7688_01008 | B9J8R3 | Positive | 1051757 - 1052782 | 37921.1 |
| udp-n-acetyl-alpha-d-glucosamine c6 dehydratase | SHM7688_01009 | P39853 | Negative | 1052820 - 1054706 | 68531.0 |
| polysaccharide export protein wza | SHM7688_01010 | P22236 | Positive | 1055118 - 1056221 | 39635.2 |
| utp--glucose-1-phosphate uridylyltransferase | SHM7688_01011 | Q05852 | Positive | 1056421 - 1057314 | 32260.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
