Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arginine biosynthesis bifunctional protein argj | SHM7688_00992 | Q5LWL6 | Negative | 1033115 - 1034344 | 42411.1 |
| putative parvulin-type peptidyl-prolyl cis-trans isomerase precursor | SHM7688_00993 | A4IKU2 | Negative | 1034348 - 1035217 | 30958.1 |
| preprotein translocase subunit seca | SHM7688_00994 | Q5LWK0 | Positive | 1035389 - 1038097 | 100613.0 |
| hypothetical protein | SHM7688_00995 | Not Available | Positive | 1038203 - 1039207 | 35473.4 |
| phosphate-binding protein psts precursor | SHM7688_00996 | Not Available | Positive | 1039228 - 1040784 | 56089.7 |
| dna repair protein radc | SHM7688_00997 | Q5LWK3 | Negative | 1040786 - 1041547 | 28073.0 |
| glutamate/aspartate periplasmic-binding protein precursor | SHM7688_00998 | Not Available | Positive | 1041864 - 1042703 | 29662.9 |
| hypothetical protein | SHM7688_00999 | Not Available | Positive | 1042865 - 1043272 | 15372.2 |
| chaperone protein dnaj | SHM7688_01000 | B9KPP3 | Negative | 1043349 - 1044500 | 40784.1 |
| heat shock protein 70 | SHM7688_01001 | Q1GKS3 | Negative | 1044581 - 1046500 | 68760.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
