Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| homoprotocatechuate degradation operon regulator, hpar | SHM7688_00982 | Not Available | Positive | 1023045 - 1023485 | 16290.9 |
| 3-demethylubiquinone-9 3-methyltransferase | SHM7688_00983 | Q1GCH8 | Negative | 1023493 - 1024236 | 27178.4 |
| proline iminopeptidase | SHM7688_00984 | P93732 | Positive | 1024286 - 1025260 | 36516.3 |
| dipeptide-binding protein | SHM7688_00985 | A0A0H2ZGN2 | Positive | 1025326 - 1026834 | 54210.1 |
| ribosome maturation factor rimp | SHM7688_00986 | Q1GCH5 | Positive | 1026976 - 1027569 | 21590.6 |
| hypothetical protein | SHM7688_00987 | Q92HF4 | Positive | 1027575 - 1029188 | 59663.3 |
| hypothetical protein | SHM7688_00988 | Not Available | Positive | 1029212 - 1029844 | 22242.8 |
| translation initiation factor if-2 | SHM7688_00989 | Q1GCH2 | Positive | 1029841 - 1032333 | 89744.7 |
| hypothetical protein | SHM7688_00990 | Not Available | Negative | 1032420 - 1032560 | 4864.08 |
| ctp pyrophosphohydrolase | SHM7688_00991 | P32090 | Negative | 1032720 - 1033118 | 14859.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
