Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative multidrug export atp-binding/permease protein | SHM7688_00972 | Q57180 | Positive | 1013795 - 1015636 | 67523.7 |
| 23s rrna (uracil(1939)-c(5))-methyltransferase rlmd | SHM7688_00973 | Q8G290 | Positive | 1015685 - 1016899 | 43724.6 |
| l,d-transpeptidase catalytic domain | SHM7688_00974 | P0AAA0 | Positive | 1016991 - 1017485 | 18341.0 |
| cysteine-rich secretory protein family protein | SHM7688_00975 | Not Available | Negative | 1017482 - 1018009 | 18864.3 |
| putative l,d-transpeptidase erfk/srfk precursor | SHM7688_00976 | Not Available | Positive | 1018176 - 1018772 | 22284.4 |
| hypothetical protein | SHM7688_00977 | Not Available | Positive | 1018920 - 1019099 | 5671.98 |
| ferrochelatase | SHM7688_00978 | Q59735 | Negative | 1019235 - 1020287 | 39977.5 |
| biotin biosynthesis protein bioc | SHM7688_00979 | O80543 | Negative | 1020311 - 1021147 | 30607.1 |
| dna utilization protein gntx | SHM7688_00980 | Not Available | Positive | 1021148 - 1021876 | 25827.7 |
| (r)-stereoselective amidase | SHM7688_00981 | P55175 | Positive | 1022283 - 1023044 | 27700.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
