Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sulfotransferase domain protein | SHM7688_00962 | Not Available | Positive | 999252 - 999986 | 27734.0 |
| gdp-l-fucose synthase | SHM7688_00963 | P32055 | Positive | 1000057 - 1000995 | 34476.3 |
| alginate biosynthesis protein alga | SHM7688_00964 | B0RVK6 | Positive | 1001019 - 1002467 | 51724.2 |
| hypothetical protein | SHM7688_00965 | Not Available | Negative | 1002500 - 1003885 | 49434.6 |
| hypothetical protein | SHM7688_00966 | Not Available | Negative | 1004006 - 1004560 | 19759.8 |
| cyclolysin | SHM7688_00967 | Not Available | Negative | 1004734 - 1007355 | 90481.0 |
| cyclolysin | SHM7688_00968 | Not Available | Negative | 1007654 - 1010332 | 92955.1 |
| serralysin precursor | SHM7688_00969 | Not Available | Negative | 1010541 - 1012805 | 76833.2 |
| hypothetical protein | SHM7688_00970 | Not Available | Negative | 1012869 - 1013231 | 13242.6 |
| hypothetical protein | SHM7688_00971 | Not Available | Positive | 1013424 - 1013561 | 5099.18 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
