Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia marina
Accession NumberCYPW00000000.1
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| Terminase large subunit | SHM7688_02905 | Not Available | + | 2959839 - 2961140 | 47710.9 |
| Portal protein | SHM7688_02906 | Q1RIH4 | + | 2961284 - 2962489 | 43148.1 |
| hypothetical protein | SHM7688_02907 | Not Available | + | 2962482 - 2962739 | 9645.67 |
| Putative prohead protease | SHM7688_02908 | Not Available | + | 2962769 - 2963311 | 19523.6 |
| hypothetical protein | SHM7688_02909 | Not Available | - | 2963222 - 2964448 | 45787.8 |
| phage gp6-like head-tail connector protein | SHM7688_02910 | Not Available | + | 2964650 - 2965249 | 21333.5 |
| bacteriophage head-tail adaptor | SHM7688_02911 | Not Available | + | 2965246 - 2965587 | 12154.5 |
| hypothetical protein | SHM7688_02912 | Not Available | + | 2965584 - 2966000 | 14883.9 |
| Gene transfer aget (gta) orfg9-like phage major tail protein | SHM7688_02913 | Not Available | + | 2966016 - 2966429 | 14314.6 |
| hypothetical protein | SHM7688_02914 | Not Available | + | 2966433 - 2966768 | 11294.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.