Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rhomboid family intramembrane serine protease | DXB87_05025 | Not Available | Negative | 1065032 - 1065706 | 25245.5 |
| hypothetical protein | DXB87_05030 | Not Available | Negative | 1065773 - 1066423 | 25799.7 |
| signal peptidase i | DXB87_05035 | Not Available | Negative | 1066440 - 1067357 | 34653.8 |
| s26 family signal peptidase | DXB87_05040 | Not Available | Negative | 1067361 - 1068785 | 55129.4 |
| 4-hydroxy-tetrahydrodipicolinate reductase | DXB87_05045 | Not Available | Negative | 1068788 - 1069543 | 27319.6 |
| duf2851 family protein | DXB87_05050 | Not Available | Positive | 1069627 - 1070898 | 49040.7 |
| pp_00984 | DXB87_05055 | Not Available | Negative | 1070900 - 1071886 | Not Available |
| acyl-coa thioesterase | DXB87_05060 | Not Available | Positive | 1071900 - 1072307 | 15574.8 |
| dna-protecting protein dpra | DXB87_05065 | Not Available | Positive | 1072304 - 1073416 | 40574.2 |
| succinate dehydrogenase/fumarate reductase iron-sulfur subunit | DXB87_05070 | Not Available | Negative | 1073626 - 1074381 | 27442.3 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

