Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4982 domain-containing protein | DXB87_04975 | Not Available | Negative | 1042875 - 1045280 | 90175.7 |
| beta-glycosidase | DXB87_04980 | Not Available | Negative | 1045290 - 1046909 | 60432.0 |
| ragb/susd family nutrient uptake outer membrane protein | DXB87_04985 | Not Available | Negative | 1046993 - 1048693 | 63948.7 |
| tonb-dependent receptor | DXB87_04990 | Not Available | Negative | 1048707 - 1051739 | 112269.0 |
| hypothetical protein | DXB87_04995 | Not Available | Negative | 1051760 - 1053328 | 58314.6 |
| response regulator | DXB87_05000 | Not Available | Positive | 1053503 - 1057597 | 155730.0 |
| protein translocase subunit secdf | DXB87_05005 | Not Available | Negative | 1057798 - 1060791 | 109121.0 |
| m3 family peptidase | DXB87_05010 | Not Available | Negative | 1060997 - 1063090 | 78805.7 |
| endonuclease | DXB87_05015 | Not Available | Negative | 1063109 - 1064167 | 39777.3 |
| rhomboid family intramembrane serine protease | DXB87_05020 | Not Available | Negative | 1064164 - 1065057 | 33924.7 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

