Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methionine--trna ligase | DXB87_04920 | Not Available | Positive | 1029214 - 1031256 | 77732.8 |
| lipopolysaccharide biosynthesis protein | DXB87_04925 | Not Available | Positive | 1031351 - 1032796 | 53820.0 |
| licd family protein | DXB87_04935 | Not Available | Positive | 1033887 - 1034774 | 34621.8 |
| hemolysin activation protein | DXB87_04940 | Not Available | Positive | 1034789 - 1035850 | 42155.2 |
| glycosyltransferase | DXB87_04945 | Not Available | Positive | 1035863 - 1036939 | 41831.9 |
| glycosyltransferase | DXB87_04950 | Not Available | Positive | 1036967 - 1038229 | 47434.6 |
| glycosyltransferase | DXB87_04955 | Not Available | Positive | 1038222 - 1038986 | 29531.6 |
| hypothetical protein | DXB87_04960 | Not Available | Negative | 1039046 - 1041535 | 92810.4 |
| 5'-methylthioadenosine/adenosylhomocysteine nucleosidase | DXB87_04965 | Not Available | Positive | 1041626 - 1042321 | 25614.7 |
| s-ribosylhomocysteine lyase | DXB87_04970 | Not Available | Positive | 1042329 - 1042808 | 18008.9 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

